Publications

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Journal Article
D. Marbach, Costello, J. C., Küffner, R., Vega, N. M., Prill, R. J., Camacho, D. M., Allison, K. R., Kellis, M., Collins, J. J., Aderhold, A., Stolovitzky, G., Bonneau, R., Chen, Y., Cordero, F., Crane, M., Dondelinger, F., Drton, M., Esposito, R., Foygel, R., De La Fuente, A., Gertheiss, J., Geurts, P., Greenfield, A., Grzegorczyk, M., Haury, A. - C., Holmes, B., Hothorn, T., Husmeier, D., Huynh-Thu, V. A., Irrthum, A., Karlebach, G., Lebre, S., De Leo, V., Madar, A., Mani, S., Mordelet, F., Ostrer, H., Ouyang, Z., Pandya, R., Petri, T., Pinna, A., Poultney, C. S., Rezny, S., Ruskin, H. J., Saeys, Y., Shamir, R., Sirbu, A., Song, M., Soranzo, N., Statnikov, A., Vega, N. M., Vera-Licona, P., Vert, J. - P., Visconti, A., Wang, H., Wehenkel, L., Windhager, L., Zhang, Y., and Zimmer, R., Wisdom of crowds for robust gene network inference, Nature Methods, vol. 9, pp. 796-804, 2012.
A. Sirbu and Babaoglu, O., Towards operator-less data centers through data-driven, predictive, proactive autonomics, Cluster Computing, pp. 1–14, 2016.
A. Sirbu, Kerr, G., Crane, M., and Ruskin, H. J., RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering., PLoS One, vol. 7, p. e50986, 2012.
A. Sirbu, Ruskin, H. J., and Crane, M., Regulatory network modelling: Correlation for structure and parameter optimisation, Proceedings of The IASTED Technology Conferences (International Conference on Computational Bioscience), Cambridge, Massachusetts, pp. 3473–3481, 2010.
A. Sirbu, Giannotti, F., Pedreschi, D., and Kertész, J., Public opinion and Algorithmic bias, ERCIM News, 2019.
A. Sirbu, Becker, M., Caminiti, S., De Baets, B., Elen, B., Francis, L., Gravino, P., Hotho, A., Ingarra, S., Loreto, V., Molino, A., Mueller, J., Peters, J., Ricchiuti, F., Saracino, F., Servedio, V. D. P., Stumme, G., Theunis, J., Tria, F., and Van den Bossche, J., Participatory Patterns in an International Air Quality Monitoring Initiative., PLoS One, vol. 10, p. e0136763, 2015.
A. Sirbu, Loreto, V., Servedio, V. D. P., and Tria, F., Opinion dynamics with disagreement and modulated information, Journal of Statistical Physics, pp. 1–20, 2013.
G. Rossetti, Milli, L., Rinzivillo, S., Sirbu, A., Pedreschi, D., and Giannotti, F., NDlib: a python library to model and analyze diffusion processes over complex networks, International Journal of Data Science and Analytics, pp. 1–19, 2017.
G. Rossetti, Milli, L., Rinzivillo, S., Sirbu, A., Pedreschi, D., and Giannotti, F., NDlib: a python library to model and analyze diffusion processes over complex networks, International Journal of Data Science and Analytics, vol. 5, pp. 61–79, 2018.
A. Sirbu, Ruskin, H. J., and Crane, M., Integrating heterogeneous gene expression data for gene regulatory network modelling., Theory Biosci, vol. 131, pp. 95-102, 2012.
A. Sirbu, Andrienko, G., Andrienko, N., Boldrini, C., Conti, M., Giannotti, F., Guidotti, R., Bertoli, S., Kim, J., Muntean, C. Ioana, and others, Human migration: the big data perspective, International Journal of Data Science and Analytics, pp. 1–20, 2020.
P. Contucci, Panizzi, E., Ricci-Tersenghi, F., and Sirbu, A., Egalitarianism in the rank aggregation problem: a new dimension for democracy, Quality & Quantity, pp. 1–16, 2015.
A. Sirbu, Crane, M., and Ruskin, H. J., Data Integration for Microarrays: Enhanced Inference for Gene Regulatory Networks, Microarrays, vol. 4, pp. 255–269, 2015.
A. Sirbu, Ruskin, H. J., and Crane, M., Cross-platform microarray data normalisation for regulatory network inference., PLoS One, vol. 5, p. e13822, 2010.
A. Sirbu, Ruskin, H. J., and Crane, M., Comparison of evolutionary algorithms in gene regulatory network model inference., BMC Bioinformatics, vol. 11, p. 59, 2010.
A. Sirbu, Loreto, V., Servedio, V. D. P., and Tria, F., Cohesion, consensus and extreme information in opinion dynamics, Advances in Complex Systems, vol. 16, p. 1350035, 2013.
A. Balliu, Olivetti, D., Babaoglu, O., Marzolla, M., and Sirbu, A., A Big Data Analyzer for Large Trace Logs, Computing, 2015.
M. Becker, Caminiti, S., Fiorella, D., Francis, L., Gravino, P., Haklay, M. Muki, Hotho, A., Loreto, V., Mueller, J., Ricchiuti, F., Servedio, V. D. P., Sirbu, A., and Tria, F., Awareness and learning in participatory noise sensing., PLoS One, vol. 8, p. e81638, 2013.
A. Sirbu, Pedreschi, D., Giannotti, F., and Kertész, J., Algorithmic bias amplifies opinion fragmentation and polarization: A bounded confidence model, PloS one, vol. 14, p. e0213246, 2019.
Conference Proceedings
A. Sirbu and Babaoglu, O., Power Consumption Modeling and Prediction in a Hybrid CPU-GPU-MIC Supercomputer, 22nd International European Conference on Parallel and Distributed Computing, Euro-Par 2016, vol. LNCS 9833. Springer LNCS, Grenoble, France, 2016.

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